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DEQ's Water Quality Permitting Program

Water Quality Permitting Program

Permit Issuance Plans

Water Quality NPDES Individual Permit Issuance Plans

5-Year Issuance Plans

Annual report

2024 Annual Report on Oregon’s Water Quality National Pollutant Discharge Elimination System Permit Program

Current water quality permit fees

The Environmental Quality Commission delegated approval authority to DEQ Director Leah Feldon who adopted rules to increase water quality permit, license and certification fees by up to 3% in 2025 for fiscal year 2026, as provided in ORS 468B.051. The amount of the increase may not exceed the anticipated increase in the cost of administering the program or 3%, whichever is lower.

DEQ will begin receiving the increased fee revenue on Nov. 1, 2025.

Individual and General NPDES and WPCF Permits:
401 Dredge and Fill Fees
Wastewater System Operator Certification Fees
Onsite Septic System Permits:
Oregon Administrative Rule 340-071-0800 Fee Tables 9A-9F and Oregon Administrative Rule 340-071-0220 Table 1-8 (Effective Nov. 1, 2025) 

 To learn about future fee increases, please sign up for text or email updates via GovDelivery.

Non-DEQ permits

Your DEQ Online

DEQ's Stormwater, UIC and 401 Certification programs moved to a new electronic data management system called Your DEQ Online. For those programs, you can set up your account and start submitting notifications and pay fees electronically. Visit Your DEQ Online Help page for training materials and guidance documents.

Starting in fall 2024, all remaining water quality permits administered by DEQ will be available in Your DEQ Online. Permits administered by City of Eugene, City of Portland, Clean Water Services, DOGAMI, or Rogue Valley Sewer Services will be coming to Your DEQ Online at a later date.

Water Quality Permits Contact

Jeff Navarro 
Water Quality Program Analyst
503-229-5257